PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G02976

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 290aa MW: 32466.6 Da PI: 7.859

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G02976	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.6	3.8e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l +++k +G g+W+ +++ g++R++k+c++rw++yl Ro01_G02976 14 RGAWTALEDRILTEYIKVHGEGRWRNLPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	53.5	5.6e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Ro01_G02976 67 RGNISPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7899****************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MGRSPCCAKE GLNRGAWTAL EDRILTEYIK VHGEGRWRNL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLSKRIQDQE 120 AGSLSKAGGE DIPKSKKSKN VMASPLSHNV VRTKAAKCTK VLINPHYKGL FLLDDHKPVD 180 HHHQQVDHQP NTDHGLSSSP SSSSNFLFDF GINSELCLSN LLGSDFASGD DHLFSEELLL 240 QQQYWSGNVG GDCVVDHQLQ PNMALNFQSL NSFLDGDADQ GEWLALAESS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	3e-62	MYB family protein