PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G03027
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 215aa    MW: 23869.1 Da    PI: 5.0684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G03027genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.7e-191665255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +ykGVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  Ro01_G03027 16 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 65
                 8*****999.**********933...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MVKHTIANPS ERNDAKYKGV RKRKWGKWVS EIRLPNSRER IWLGSYDTPE KAARAFDAAL  60
FCLRGRTASF NFPDNPPDIS GGRSLSPAEI QAEAARFANN DTTPPPPRSS HSDHSMTTSE  120
LQSQTESPSV SEGSGTLLMD THTSDFNVTV HDQSFSDLFR TFGSGNYASE YGLFPGFDDL  180
NGHFFTPAPQ TPAVDYPEDN LDGSVVPQES FLWNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-60ERF family protein