PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G03172
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 286aa    MW: 32547.1 Da    PI: 6.679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G03172genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08151191954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Ro01_G03172 151 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 191
                  699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MDHTSYTNKL LANTGDHLDD HMGMEDPIQL HHHHHHHHEI SYDSVWPNFP LQLHHQVPSS  60
SSTHFHHEQF GHQDHDHHHH QLVLAGNYNN FLDQEDNHHQ EEPEEEEELG AMKEMMYKIA  120
AMQPVDIDPA TIRKPKRRNV RISEDPQSVA ARHRRERISE KIRILQRLVP GGTKMDTASM  180
LDEAIRYVKF LKRQIRFLQQ SNHHHPHQQC INVNGGVLGT TSATNTEALA GGGAPLDWPP  240
PPIQGSATSS SMDTPTTRPV LGFTAFGGSR GDIAALSFNH EVMFYQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-47bHLH family protein