PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G04133
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 164aa    MW: 18123.5 Da    PI: 9.1925
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G04133genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.9e-181968255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Ro01_G04133 19 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPIAAARAYDTAVFYLRG 68
                 69*****99.**********9...336*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MDGQEAANRK RGGVDNDKPY KGIRMRKWGK WVAEIREPNK RSRIWLGSYS TPIAAARAYD  60
TAVFYLRGPT ARLNFPEALA GEGGGCGCDG DMSAASIRKK ATEVGARVDA VETAMRHHRA  120
AAAPTAEMKP CTAGSVDRVD LNKMPDPEDL DADWERIEFK WRIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.14e-56ERF family protein