PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G04210
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 436aa    MW: 48834.8 Da    PI: 5.4368
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G04210genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.21.8e-94314332373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalkl..fsevsPilkfshl 96 
                  ++lL++cA+a++++d++laq++L+ l+++a pdgd++qRl+  f++AL ar ars+s +l +a+++ e++   +++++++ +l  f +++P+++f++ 
  Ro01_G04210  31 EQLLVHCANAIETNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALIARAARSGSlKLLAAMNAAEANLAIHTHKFSVIELagFIDLTPWHRFGFT 128
                  79****************************************************5442677777777777666777778888799************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl....... 181
                  +aN aIleaveg + +Hi+D+++++++Q p+L +a+asR+    +pp l++T+ g  e +      ++ee+g++L +fA++ ++ +ef+v+       
  Ro01_G04210 129 AANAAILEAVEGYSVIHIVDLSLTHCMQIPTLVDAIASRQdvlTNPPLLKLTVAGTTEDVppmLDLSYEELGSKLVNFARSRNIILEFRVIpssytdg 226
                  ****************************************99999***********887798888999***********************9886555 PP

         GRAS 182 vakrledleleeLrvkp..gEalaVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                   a+ +e+l+l++L   +  +Eal++n++++lh+++               + ++s++s r  +Lk+v++l P+vvv+v+++ad++s++++ r+ +a++
  Ro01_G04210 227 FANLIEQLRLQNLVYPEsgHEALVINCHMMLHYIPeetfqnfepcsssstSITTSSTSLRAMFLKAVRGLDPTVVVLVDEDADLTSNDLVGRLRSAFN 324
                  5556666666666555599***************************997755556666889************************************* PP

         GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                  y +  +d++++ lpr s++r+++E+  + ++i+nv+a eg++r+er e + +W +r+++aGF++v+++e+a++++k++l +++  g+ ++ e++ lvl
  Ro01_G04210 325 YLWIPYDTVDTFLPRGSKQRQWYEAD-VCWKIENVIAYEGFQRVERLEPKCRWVQRMRSAGFRSVSFGEEAVNEVKTMLDEHA-AGWGLKREEEDLVL 420
                  **************************.99******************************************************.8999********** PP

         GRAS 361 gWkdrpLvsvSaW 373
                  +Wk++++v+++aW
  Ro01_G04210 421 TWKGHNVVFATAW 433
                  ************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    
MNKNQTQRTR PWPGFPTSSK LTNFGDANCM EQLLVHCANA IETNDATLAQ QILWVLNNIA  60
PPDGDSNQRL TCAFLRALIA RAARSGSLKL LAAMNAAEAN LAIHTHKFSV IELAGFIDLT  120
PWHRFGFTAA NAAILEAVEG YSVIHIVDLS LTHCMQIPTL VDAIASRQDV LTNPPLLKLT  180
VAGTTEDVPP MLDLSYEELG SKLVNFARSR NIILEFRVIP SSYTDGFANL IEQLRLQNLV  240
YPESGHEALV INCHMMLHYI PEETFQNFEP CSSSSTSITT SSTSLRAMFL KAVRGLDPTV  300
VVLVDEDADL TSNDLVGRLR SAFNYLWIPY DTVDTFLPRG SKQRQWYEAD VCWKIENVIA  360
YEGFQRVERL EPKCRWVQRM RSAGFRSVSF GEEAVNEVKT MLDEHAAGWG LKREEEDLVL  420
TWKGHNVVFA TAWMPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-176GRAS family protein