PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G04212
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 240aa    MW: 26161.8 Da    PI: 8.3329
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G04212genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.57.7e-322103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg+++++++q++q+++e
  Ro01_G04212   2 SCNGCRVLRKGCSESCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPVLFQSLLFEACGRTVNPVNGAVGLLWTGNWQVCQAAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Ro01_G04212 100 TVLR 103
                  9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MSCNGCRVLR KGCSESCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PVLFQSLLFE ACGRTVNPVN GAVGLLWTGN WQVCQAAVET VLRGGTLRPI PELVSGLTPD  120
EASEACTDMW RLRDPTHNSG SSSRFTNSRS KAAASSPTTK RKRSDDESLK LLQHSDLDLR  180
LTPTLAFRPK PKPETRRPGS PSMNSEESVV TTCFESGSGF AEQYPNGLVG SEIKLLNLFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.16e-89LBD family protein