PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G04271

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bZIP

Protein Properties

Length: 247aa MW: 28775.3 Da PI: 10.9272

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G04271	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	145	190	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++ rr+++NRe+ArrsR RK+ +e+L++ v +L eN++L ++l Ro01_G04271 145 RKRRRMISNRESARRSRMRKQRHLENLRNQVNKLRIENRELNNRLR 190 5789***********************************9998875 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MLLLILPVQL AFKYGTLMLR FFPFLLLPLS LSKFELLFKQ TMLSTIPAML PSETLLHFPA 60 FDTGFTPGGF TPWESELFPA IQYSPKPVIS DPSSGAVQTQ STKPVISSSG SDDDPDRNRP 120 DPDHVNVKSC QINCSNRTVS VVDERKRRRM ISNRESARRS RMRKQRHLEN LRNQVNKLRI 180 ENRELNNRLR FVMYHFQRVR TDNDRLRAEH TMLRQKLLDI RQILVFRQLQ HMSSAWPCNS 240 VITEQPP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	149	RKRRR
2	158	165	RRSRMRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22850.1	7e-29	bZIP family protein