PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G05074

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 431aa MW: 45034.7 Da PI: 6.5819

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G05074	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	5.9e-12	253	298	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Ro01_G05074 253 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 298 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MQEMNSLLNP QPNTSSSSQL SLQDLQLQQH SRIQSSQMNP QTPFDSSSHD DFLEQMLSTL 60 GPSSCSSWVD ETPPSAANDS NVVFSYDDSA SLASKFRSHQ ISAGAAASKS SPTASAAAAA 120 AMMLQHQLMM SRGSAGNGNC DSGFVPMALS LGNNGDFDRS HNDVVDGSSF KSPNPRGDGP 180 SSVQALFNGF TGSLSPNQPQ HFHHPQGGSL QAQNYGAPAA AMNQTPVSGS AGAAAAQPRP 240 RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK TDKASMLDEI IDYVKFLQLQ 300 VKGGGDCIQT SANGGTRGRN GNQTASSNDS MTVTEHQVAK LMEEDMGSAM QYLQGKGLCL 360 MPISLATAIS TATCHTRNPL MNSNPVMASN GGEGPSSPSM SVLTVQSATM ASNGGVDGSG 420 SGKDAASVSK P

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MQEMNSLLNP QPNTSSSSQL SLQDLQLQQH SRIQSSQMNP QTPFDSSSHD DFLEQMLSTL  60
GPSSCSSWVD ETPPSAANDS NVVFSYDDSA SLASKFRSHQ ISAGAAASKS SPTASAAAAA  120
AMMLQHQLMM SRGSAGNGNC DSGFVPMALS LGNNGDFDRS HNDVVDGSSF KSPNPRGDGP  180
SSVQALFNGF TGSLSPNQPQ HFHHPQGGSL QAQNYGAPAA AMNQTPVSGS AGAAAAQPRP  240
RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK TDKASMLDEI IDYVKFLQLQ  300
VKGGGDCIQT SANGGTRGRN GNQTASSNDS MTVTEHQVAK LMEEDMGSAM QYLQGKGLCL  360
MPISLATAIS TATCHTRNPL MNSNPVMASN GGEGPSSPSM SVLTVQSATM ASNGGVDGSG  420
SGKDAASVSK P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	258	263	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-59	bHLH family protein