PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G07693

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 202aa MW: 23781 Da PI: 8.1671

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G07693	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	19	41	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s k + +Hi tH Ro01_G07693 19 YYCEYCGICRSKKTLIASHILTH 41 89********************6 PP
2	zf-C2H2	22.2	3.7e-07	62	83	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Ro01_G07693 62 TCEECGATFKKPAYLKQHMQSH 83 6*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MDKGEAEEKR PVFRDIRRYY CEYCGICRSK KTLIASHILT HHKDEMEMAK ADEEVEMEKS 60 NTCEECGATF KKPAYLKQHM QSHSLELSWT QWKHSALKRL KSNLLQHVKA VHLQQKPFAC 120 SFSGCGKTFS YKHVRDKHEK SGCHGDFEEA DEQFRSRPRG GRKRKCPTVE MLVRKRVTPP 180 DEFGPESEFL FRFFSQEEED EQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	165	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	2e-31	C2H2 family protein