PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G08677

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 212aa MW: 23986 Da PI: 9.5172

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G08677	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.3	2.2e-10	5	36	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd ll ++++++G g+W++++ g Ro01_G08677 5 KGAWTKEEDHLLRNYIEKHGEGRWHKVPLQAG 36 79*************************98887 PP
2	Myb_DNA-binding	26.7	1.3e-08	80	120	15	44
HHHHTTTT............-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 15 avkqlGgg............tWktIartmgkgRtlkqcksrw 44 a++q+ + tW++Ia +++ gRt +++k++w Ro01_G08677 80 AHRQHANTlgcnstgddlvfTWSLIAGRLP-GRTSNDVKNYW 120 78888888888899999***********.********* PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MEVRKGAWTK EEDHLLRNYI EKHGEGRWHK VPLQAGVRLS ALNMVTIYIS LEKRKGDSKT 60 VSLSPFGIPS CADSCWSHRA HRQHANTLGC NSTGDDLVFT WSLIAGRLPG RTSNDVKNYW 120 SARQRRKIDF GIPKDNEPPK ITTKTTVIRP RPRTFTKSLH HLSAEAATSK HGHLENNSLP 180 SSSSPIENGI DEWKTLLEED VFTNFWVEDT AS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	3e-24	MYB family protein