PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G08679

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 250aa MW: 28913.9 Da PI: 9.8527

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G08679	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.4	9.1e-15	5	52	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll +++++ G g W+ ++ g +R++k+c+ rw++yl Ro01_G08679 5 KGAWTKEEDHLLRNYIEKNGEGKWHNVPLQAGVNRCRKSCRMRWLNYL 52 79********************************************97 PP
2	Myb_DNA-binding	27.3	8.4e-09	58	131	1	44
TSSS-HHHHHHHHHHHHHTTTT...............................-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...............................tWktIartmgkgRtlkqcksrw 44 rg + ++E +l +++ k+lG++ W++Ia +++ gRt +++k++w Ro01_G08679 58 RGDFAEDEVDLMIRLRKLLGNRqvpatwsflalylindvlislaklttnkyqqKWSLIAGRLP-GRTSNDVKNYW 131 677788899999999999999999999999999999999999999999999999*******.********* PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MEVRKGAWTK EEDHLLRNYI EKNGEGKWHN VPLQAGVNRC RKSCRMRWLN YLKPNLKRGD 60 FAEDEVDLMI RLRKLLGNRQ VPATWSFLAL YLINDVLISL AKLTTNKYQQ KWSLIAGRLP 120 GRTSNDVKNY WSARRRGKID FGVAKDNEPP KITKTTIIRP RPRTFTKSLH HLSAEAATSK 180 HGHLENNSLP SSSSPIENGI DEWKTLLEED VFTNFWVEDT AASMTGTSVS YAEQDFEMVL 240 RHFLQEEARD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	2e-45	MYB family protein