PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G08687
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YB
Protein Properties Length: 230aa    MW: 25392.3 Da    PI: 7.6621
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G08687genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.84.9e-5638133297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk yl+kyre+egek
  Ro01_G08687  38 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKGYLNKYRETEGEK 133
                  89********************************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MKYLMRMQMP FIMSGKRNQT SPVGSPLSCG NVSDGGSKEQ DRFLPIANVS RIMKKSLPAN  60
AKISKEAKET VQECVSEFIS FITGEASDKC QREKRKTING DDLLWAMTTL GFENYVGPLK  120
GYLNKYRETE GEKNSMARGP EDHNHSSHDD HHINNNNNQI HNGANEINTV GINKVDFFNN  180
GGFYSLGGQQ VMSATPKGFG ESGRVNIGYG ENLVTYGDGN ANHLHNGIGW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-63NF-YB family protein