PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G10347
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family YABBY
Protein Properties Length: 188aa    MW: 21178.9 Da    PI: 8.301
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G10347genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY222.11.6e-6861624170
        YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
                  +  +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++         ++++ +++ +n++    ++++ ++++++   
  Ro01_G10347   6 DPVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAQNYNHNAQNYRIDSGSSSKGNKKIATR-- 93 
                  5679*********************************************9999999985........44555555555555444444444444442.. PP

        YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  ++  d+++++   v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  Ro01_G10347  94 DSIADHHATEERGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 162
                  33445555555679*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MSNCIDPVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS  60
WQDVQAQNYN HNAQNYRIDS GSSSKGNKKI ATRDSIADHH ATEERGVNRP PEKRQRVPSA  120
YNQFIKEEIQ RIKANNPDIS HREAFSTAAK NWAHFPHIHF GLMLETNNQA KLDNGSEKHL  180
MSRAALLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.16e-86YABBY family protein