PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G10361
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 217aa    MW: 24226.2 Da    PI: 7.9808
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G10361genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18654153
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                 ++++GVr+++ +g+Wv+eIr+p        +r++lg+f +aeeAa+a+++a+  +
  Ro01_G10361  6 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFESAEEAARAYDEAAVLM 54
                 59*******9.**********8.....334*********************9765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MVQSTKKFRG VRQRHWGSWV SEIRHPLLKR RVWLGTFESA EEAARAYDEA AVLMSGRNAK  60
TNFPITAQSS SSTSPGNDSS SRNGGLSEIL RAKLRKCSNA LSPSMTCLRL DNESSHIGVW  120
QKCAGRPSDH WVMTVQLGKK NTNNAGDTNN QQSILSPLLC SESPAYERPK LIAEDAHEMN  180
EEEKISLQMI EELLNRNFPM PNSSAAIDQQ EDGSFYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-55ERF family protein