PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G10771
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 382aa    MW: 41572.1 Da    PI: 4.9232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G10771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67.1e-16147193455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Ro01_G10771 147 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 193
                  6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MGMGDTYEYN YQNNPCSSSA PASSVSAAQP HSSTDEISLF LQQILVRSSS LGGQQFLFSS  60
APSGYALPDN LSRPCHSTFP GDGIRAVDSV ATASAPNVSS SSVGASENEA DEYDCESEEG  120
LEALVEEAAA KSSGARNSSK RSRAAEVHNL SEKRRRSRIN EKMKALQNLI PNSNKTDKAS  180
MLDEAIEYLK QLQLQVQMLS MRNGMSLHPM CLPGVSQPVQ LSQLRMDFGE ENRPLHLNMS  240
GTGTLHMNQE PSTQNLYNAN QSYVPDMSNV VNSEDAFGLD SSIQSHLGPF QLPTSSKGIC  300
RDELLQHQLT GVNPSETNPL EFELGARATV SLPFSAQVSD LKGNGSLETC IIGRDRREVK  360
PLKSIEQHLH LDSSIKESYQ ND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-54bHLH family protein