PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G10781
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 248aa    MW: 27758.8 Da    PI: 10.3107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G10781genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08166206954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Ro01_G10781 166 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 206
                  699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MDIDMLKSSS AGHDLHHPHH HLDMMTMMMQ QSPEFYHNTP PPTFSEIDFT WGSSITPNNI  60
GTMVTQPMFH NPNAVSSPSQ SQPTLLNPNL SSSTVSFIGS TNPIQSNLTN SIPSTSTYEK  120
RNSMAAMREM IFRIAAMQPI QIDPEAVKPP KRRNVKISKD PQSVAARHRR ERISERIRIL  180
QRLVPGGTKM DTASMLDEAI HYVKFLKKQV QTLERTGADR PVGVGFMGPQ LGNVNYSVGS  240
MQMLRSMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.15e-43bHLH family protein