PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G10806
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 148aa    MW: 17199.4 Da    PI: 10.7131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G10806genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-20554255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +g+W+AeI+dp     +  +r++lg+f taeeAa+a+++a+ +++g
  Ro01_G10806  5 KYRGVRQRP-WGKWAAEIQDP-----HrkARVWLGTFQTAEEAARAYDKAAVEFRG 54
                 8********.**********6.....236**********************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MKKGKYRGVR QRPWGKWAAE IQDPHRKARV WLGTFQTAEE AARAYDKAAV EFRGDKAKIN  60
FPLNTSDHDN TGFFNNMSVW NGVKLYEVTL YSDDKRHGKK QNHDLTLKLL YRETQLRAPW  120
RNGRGSCLKL PDARGFRDGL GHRDKHTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.19e-23ERF family protein