PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G11169

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 203aa MW: 22969 Da PI: 9.396

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G11169	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.8e-19	53	107	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Ro01_G11169 53 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTK 107 788899***********************************************98 PP
2	HD-ZIP_I/II	126.7	1e-40	53	142	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++lar+L l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+eL+ +l Ro01_G11169 53 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELK-AL 142 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MGSPHNSHSA VSNSFSSGRV VKRERDLSSE EVEVEKVSSR VISDEDEDGP NARKKLRLTK 60 EQSALLEESF KQHSTLNPKQ KQALARQLSL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK 120 CCETLTDENR RLQKEVQELK ALKLSQQQPL FMHMPAATLT MCPSCERIGG VGSEGANPNK 180 SPFSMAHPKP HFYNPFTNSS AAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	110	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	3e-85	HD-ZIP family protein