PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G11190

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 394aa MW: 44085.9 Da PI: 7.8176

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G11190	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	8.9e-12	161	207	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq Ro01_G11190 161 DHVLAERKRREKLSQRFIALSALVPGL-----KKMDKASVLADATKYVKQLQ 207 58899********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MEDSTFLNQY EINSHLDYSL EDLNFQSFSS ESYSSYPNFT PHQNDVDQRP AKQPKINHSN 60 WNSCTTTHDH IITPPRTSSS GSSHLISFDN SNSSAYGTLD CTTTLKPKNE VLGSGGKLNV 120 IPTLISQGNS YDPQTCSPNH AYGQGIKRAA TVTRSPLHAQ DHVLAERKRR EKLSQRFIAL 180 SALVPGLKKM DKASVLADAT KYVKQLQERM KILEEQAAKK TVESVVFVKR TQYSADDDIS 240 SSDENFDSCS DQPLPEIEAR VSDKEILIRI HCDKKKGCLA NILREIEKLD LTIVNSSVLP 300 FGNSTLDITI VSQMDVEYSM TVKDLVRKLR QALLKLEAKP CIHLSHARTD QYSTSQAILP 360 WLCVAVRLLT LARVIVKNVM SGMGRIRSSD DHQM

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MEDSTFLNQY EINSHLDYSL EDLNFQSFSS ESYSSYPNFT PHQNDVDQRP AKQPKINHSN  60
WNSCTTTHDH IITPPRTSSS GSSHLISFDN SNSSAYGTLD CTTTLKPKNE VLGSGGKLNV  120
IPTLISQGNS YDPQTCSPNH AYGQGIKRAA TVTRSPLHAQ DHVLAERKRR EKLSQRFIAL  180
SALVPGLKKM DKASVLADAT KYVKQLQERM KILEEQAAKK TVESVVFVKR TQYSADDDIS  240
SSDENFDSCS DQPLPEIEAR VSDKEILIRI HCDKKKGCLA NILREIEKLD LTIVNSSVLP  300
FGNSTLDITI VSQMDVEYSM TVKDLVRKLR QALLKLEAKP CIHLSHARTD QYSTSQAILP  360
WLCVAVRLLT LARVIVKNVM SGMGRIRSSD DHQM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	171	ERKRRE
2	167	172	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-64	bHLH family protein