PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G11207

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 365aa MW: 40738.5 Da PI: 4.4615

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G11207	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.1e-12	198	241	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Ro01_G11207 198 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 241 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MELTQHGFLE ELLAPIRRES WSTYSSGLSD FFPINNGWSF DSNFEENPVL VSASNPQFVG 60 FSTQTEPTFE CPLLSEHQAS SYPFVDGGGV ITVPAEIDSS YTNNNDSNTP PFPSQEQDYP 120 SMVEDEEFGN FLGSENHSSC LELEESKNST CKVEMEQQGT TITTDHGDIP VSFNMGLCDG 180 KRSSSKSKKL EGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE 240 LLERINKLQE GKIEEGTNQF SLMGISKELN ASEVLVRNSP KFDVERRDMD TRIDICCAAK 300 PGLLLSTVST IEALGLEIQQ CVISCFNDFS LQASCSEGAE QRTMINSEDI KQALFRNAGY 360 GGRCL

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MELTQHGFLE ELLAPIRRES WSTYSSGLSD FFPINNGWSF DSNFEENPVL VSASNPQFVG  60
FSTQTEPTFE CPLLSEHQAS SYPFVDGGGV ITVPAEIDSS YTNNNDSNTP PFPSQEQDYP  120
SMVEDEEFGN FLGSENHSSC LELEESKNST CKVEMEQQGT TITTDHGDIP VSFNMGLCDG  180
KRSSSKSKKL EGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE  240
LLERINKLQE GKIEEGTNQF SLMGISKELN ASEVLVRNSP KFDVERRDMD TRIDICCAAK  300
PGLLLSTVST IEALGLEIQQ CVISCFNDFS LQASCSEGAE QRTMINSEDI KQALFRNAGY  360
GGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	208	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	7e-97	bHLH family protein