PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G11210

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 207aa MW: 23429.6 Da PI: 6.5205

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G11210	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.3	1.5e-21	12	62	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ie s rqvtfskRr+g++ KA LS C+ae+avi+fs+t+k+ye+ss Ro01_G11210 12 KMIERLSSRQVTFSKRRKGLFNKAADLSLRCGAEIAVIVFSNTNKMYEFSS 62 5789999******************************************96 PP
2	K-box	32	5.2e-12	116	160	28	72
K-box 28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 i L +++G +L+ LslkeL++Le+q+ +++++i ++K e+ Ro01_G11210 116 IAALNLDCSRMMGMKLDGLSLKELNELEEQIREGIESIEKRKIEV 160 5567767789********************************886 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MALAGPRRTE IKMIERLSSR QVTFSKRRKG LFNKAADLSL RCGAEIAVIV FSNTNKMYEF 60 SSTTMEHILS RYINHGGGGL SMESPENKPQ DEPAAKHEPS SCDTLSAIVL RQEPIIAALN 120 LDCSRMMGMK LDGLSLKELN ELEEQIREGI ESIEKRKIEV QDYYKYKPSY MLEYSNHLDR 180 NNSQLFYGTS SSAVSDCTES GQRLFEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	1e-30	MIKC_MADS family protein