PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G11221

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 210aa MW: 24183.7 Da PI: 8.2181

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G11221	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.1	3.1e-25	10	57	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+n + rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgklye Ro01_G11221 10 RIDNCTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLYEC 57 8*********************************************95 PP
2	K-box	79.7	7e-27	81	170	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++++ +q+e++ L++e++nLq+++R+++Ge+L L +keL+ Le+qLe sl+ iR +K+++l+++ie+l +k + ++++n++L kk+ Ro01_G11221 81 NPASEMKFWQREVNILREELQNLQENHRQFMGEQLCGLGVKELKGLENQLEMSLQDIRLTKEKILTDEIEDLNQKGNFIHQQNMELYKKV 170 678899********************************************************************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MGRGKIVIQR IDNCTSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TGKLYECASN 60 SMKSVIERYN KNKEEHQQLL NPASEMKFWQ REVNILREEL QNLQENHRQF MGEQLCGLGV 120 KELKGLENQL EMSLQDIRLT KEKILTDEIE DLNQKGNFIH QQNMELYKKV FGTSALNPES 180 RNGCIPFGMS TSEESHLPIH LQLSRSDQQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-92	MIKC_MADS family protein