PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G11640
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 262aa    MW: 29737.8 Da    PI: 8.6101
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G11640genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.87.6e-251462149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 kr en+sn+qvtfskRr+gi+KKA EL vLC+a+vavi+fsst+k++ y
  Ro01_G11640 14 KRLENSSNKQVTFSKRRAGIFKKAVELTVLCGADVAVIVFSSTDKVFCY 62
                 789******************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MSKKTQGRKK IEIKRLENSS NKQVTFSKRR AGIFKKAVEL TVLCGADVAV IVFSSTDKVF  60
CYGHPNINVV LESYQNGLNA VVIAGDKAAD VPVAEFNKEY MEAEKECEGL KRKATEMKQM  120
VDEKKKMMKE MNASDEFWWD EAVDLGMMDE REAEQYLRAL EELRQKVTAR VHELKILHGT  180
MTGPPVSAVH RLFLGRLFDD ITMCLQDLSV LRLAMSIANQ IRWLIVWLAK LDLNLSLDIH  240
IRITTIPKAF SSAISNFLAV VL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-26M-type_MADS family protein