PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G11672

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 223aa MW: 25066.5 Da PI: 6.0783

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G11672	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.3	1.8e-29	127	185	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++++pr+YY+C+s gC vkk+ver+++d ++v++tYeg Hnh+ Ro01_G11672 127 MDDGYKWRKYGKKSVKNNTNPRNYYKCSSVGCDVKKRVERDRDDSSYVITTYEGVHNHD 185 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MDSSCLENPN PNPSLSNYAA FQFADQNQLD PSFMDFDELS DYLMLDYRVD DDHHLHQDSL 60 SLTVVSSEKP HTAAGSGATS RNGNNNMQVI CIYAPQYRDS AAMKNCKKEV GHGHRVAFRT 120 KSELEIMDDG YKWRKYGKKS VKNNTNPRNY YKCSSVGCDV KKRVERDRDD SSYVITTYEG 180 VHNHDTPNCA QLYFNSPAQL VDVDPNNSIW TTLPASSPSS ASS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-34	WRKY family protein