PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G12248

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 331aa MW: 37439.9 Da PI: 5.9588

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G12248	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	122	173	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+ +N+ ++ Lr+++P + ++++ + a+i A++++k+L+ Ro01_G12248 122 QRITHIAVERNRRKLMNDYLAALRSMMPAS---YAQRGDQASIIGGAINFVKELE 173 799*************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MALEAVVFQP DPFSYNGVGG YKSWDHGFGF GEDDDQQEKG YADHDMLNNG NIVGQGQMEY 60 CSPSSMGMQS VNNDFDTNNS NSNPETCTRN FNNAFSSPMA TTGRRKRRRT RIIKNKEEVE 120 TQRITHIAVE RNRRKLMNDY LAALRSMMPA SYAQRGDQAS IIGGAINFVK ELEQLLQSLE 180 ASRRRTNQQS DLDLVSIFSN FFTFPQYSTC SSTNTHGHGH DQYMNNNSVH PNELTGEKRS 240 GAIADVEVTM VESHANIKVL LKRHPRQLLE MVLGLHSLRL MILHLNVTTM DDMILYSFSV 300 KVEDNSLLTS MNEIAADVYE MVGRIQEEAQ F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	109	RKRRR
2	105	110	RKRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	3e-65	bHLH family protein