PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G14962
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family TCP
Protein Properties Length: 168aa    MW: 18465.8 Da    PI: 9.4712
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G14962genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP232.4e-07581104184
          TCP  41 fdkdsktieWLlqqakpaikeltgt........ssssasec.......eaesssssasn 84 
                  +  +sk ++WL+++ak  i+e  ++        +      +       +a ++ ++as+
  Ro01_G14962  58 HSNPSKVVDWLIKKAKSPIDEFEELpswnpsaqT------SsppvvpiSATQDTENASH 110
                  778**********************776554321......1111223322222222222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
METHRKNGGQ PQQPPPPNAV VRCFTIGFGH KDIVLHRASE ILEARGHILR ATGCKDRHSN  60
PSKVVDWLIK KAKSPIDEFE ELPSWNPSAQ TSSPPVVPIS ATQDTENASH RFSMVEAPVS  120
SLDNRRTKMQ VLFPNGCGDG GRNDVVAPQL PTRFAVENQQ SKPRSATV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.27e-12TCP family protein