PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G15237
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Dof
Protein Properties Length: 363aa    MW: 38701.6 Da    PI: 8.6524
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G15237genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.67.8e-403696262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +e+alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+++
  Ro01_G15237 36 PEQALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKRVR 96
                 6899******************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MMSSDNTPAK KPADDTHQGG GGSSSNRKTT SSKAPPEQAL KCPRCDSPNT KFCYYNNYSL  60
TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKRVRSSSS RLSCSLDSKD SGDSASDHMG  120
LKFFHGISPA MDFQLGGLSL PRLNHHPSSS SAVVTALYNN NNNNSQFSPY GDVSVPSSGL  180
TLDPSGSGAA GTNSFMGFNY PLTLGSGSGG GVGFHQNNMN SSMSVHSTLA SSIESLSSIN  240
QDLHWKLQQQ RLSMLFGTTI GGDNQTQPSQ KDMQMNDLEK TQTAPILFQN LEISKPKESA  300
GGGDTAATEW FFGNSYAPPP PVTPTPTNSG GNGVGGNENN ASNWNNHGVV QAWSDLQQYN  360
ALP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.12e-54Dof family protein