PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G15748
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 296aa    MW: 33447.9 Da    PI: 4.825
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G15748genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.2e-193279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l d+v+ +G g+W++ ar+ g++R++k+c++rw++yl
      Ro01_G15748 32 KGPWTVEEDSILMDYVNTHGEGRWNSLARHSGLKRSGKSCRLRWLNYL 79
                     79********************************************97 PP
2Myb_DNA-binding50.16.1e-1685128146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      Ro01_G15748  85 RGNITLEEQLLILQLHSRWGNR-WSKIAEYLP-GRTDNEIKNYWRT 128
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MDVDQYLLSG YGSSITAIPQ LPSSDQEDDQ RKGPWTVEED SILMDYVNTH GEGRWNSLAR  60
HSGLKRSGKS CRLRWLNYLR PNVRRGNITL EEQLLILQLH SRWGNRWSKI AEYLPGRTDN  120
EIKNYWRTRV QKHAKQLNCD VNSKQFQDAM RYVWIPRLME RIRASTSESG QATATATATA  180
FAPPAAAGSY QYWADPNLVP ETSATSSGST ELQDCLNIPG SSSTELSELK QYDPTSGQYC  240
CSTSGSGFYE YSSEIKGGSE QMESCNDWST PGGDLVENLW NEENIWFLQQ QLNSDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-73MYB family protein