PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G15919

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 494aa MW: 54613.7 Da PI: 6.7029

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G15919	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.9e-16	61	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W+ I +++g +t+ q++s+ qk+ Ro01_G15919 61 RERWTEEEHNKFLEALKLHGRA-WRNIQEHVG-SKTAVQIRSHAQKF 105 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MDPIIDRGKS LRKNGVVSDR VEEEDGGISF SAAGVELKDQ FSCGNDYAPK VRKPYTITKQ 60 RERWTEEEHN KFLEALKLHG RAWRNIQEHV GSKTAVQIRS HAQKFFSKVA RDPDGSNTSS 120 ADPINIPPPR PKRKPMRPYP RKLVQLNHME TSILKEQPTR SASPNLDTEH ENQSPTSVLS 180 LIGSDAMGSI DSNTPSGSLS PVSSATGVQN EGLIHSEPKP SLEESPSPLP AVAEDDSSLS 240 SKQFPVKLEL FPTDNVYDTG GSAEEASSRS LKLFGRTVLV TDSHRPFSPI GGPYNSLPYD 300 LQEKKPVQTS IPCKLSPMES AFGNVEHVWN NLPDGHRFIY FMQCQNENWN RSGSANIVPW 360 WTLGADSSLP SVPFSKQQTM TSNFDCNIGN PRAEQVQKER SWTGSDAGSV SDEENGGKCL 420 DVETQGHLHL SEKVEDQEPS SVFQFRASAN SAFSKLRPGK CKRAFVPYKR CMVEGDAQSS 480 TSSEERDGKR VHLC

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MDPIIDRGKS LRKNGVVSDR VEEEDGGISF SAAGVELKDQ FSCGNDYAPK VRKPYTITKQ  60
RERWTEEEHN KFLEALKLHG RAWRNIQEHV GSKTAVQIRS HAQKFFSKVA RDPDGSNTSS  120
ADPINIPPPR PKRKPMRPYP RKLVQLNHME TSILKEQPTR SASPNLDTEH ENQSPTSVLS  180
LIGSDAMGSI DSNTPSGSLS PVSSATGVQN EGLIHSEPKP SLEESPSPLP AVAEDDSSLS  240
SKQFPVKLEL FPTDNVYDTG GSAEEASSRS LKLFGRTVLV TDSHRPFSPI GGPYNSLPYD  300
LQEKKPVQTS IPCKLSPMES AFGNVEHVWN NLPDGHRFIY FMQCQNENWN RSGSANIVPW  360
WTLGADSSLP SVPFSKQQTM TSNFDCNIGN PRAEQVQKER SWTGSDAGSV SDEENGGKCL  420
DVETQGHLHL SEKVEDQEPS SVFQFRASAN SAFSKLRPGK CKRAFVPYKR CMVEGDAQSS  480
TSSEERDGKR VHLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	5e-63	MYB_related family protein