PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G16897
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Trihelix
Protein Properties Length: 65aa    MW: 7962.09 Da    PI: 9.5723
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G16897genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.66.6e-187612984
     trihelix 29 plWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
                 +lWee+s+ m++  + r++k+Ckekwen+nk+ +++k+++kkr +e+s+t++ f++
  Ro01_G16897  7 NLWEEISASMKKLDYDRNAKRCKEKWENINKYCRRLKDSNKKR-PEDSKTYRSFEN 61
                 69****************************************8.99999**99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    
MDLEGINLWE EISASMKKLD YDRNAKRCKE KWENINKYCR RLKDSNKKRP EDSKTYRSFE  60
NFVLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.13e-21Trihelix family protein