PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G17049
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YB
Protein Properties Length: 232aa    MW: 26464.2 Da    PI: 6.7928
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G17049genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.43.3e-5655150297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrkting+d++wa++tlGfedyv+plk+yl+kyrelegek
  Ro01_G17049  55 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDIIWAITTLGFEDYVHPLKLYLQKYRELEGEK 150
                  89*******************************************************************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MEDDNHGNNR LNGPNGGSPE NPCLNNSTPA SSCNSNINIQ HNHNNNHHHH HSSNKEQDRF  60
LPIANVGRIM KKVIPGNGKI SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGEDI  120
IWAITTLGFE DYVHPLKLYL QKYRELEGEK LNVPKQQRLE QRLQQQQQQV LQQEQEQQSI  180
PNSYSVYSST LMSQPTSFIT THHDQAFSLP FSPTSIQKQL QPQDQIDSVG HW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.12e-68NF-YB family protein