PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G17464
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YC
Protein Properties Length: 205aa    MW: 23156.3 Da    PI: 6.7928
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G17464genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC116.99.4e-3736136297
        NF-YC   2 lksfwekq...ieka.tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvd 94 
                  l+ fw+kq   i ++      h+lPlar+k+i+k+d  vkmis+e+P+l+skacelfi+e+tlr+wl++e +krrt++++dia+a+ +    + fl  
  Ro01_G17464  36 LQLFWNKQlldIHNTsVSRSYHQLPLARVKRIMKSDGVVKMISSETPILFSKACELFIMEVTLRAWLQTEVSKRRTVQRCDIAKAIRNDpLLYHFLAP 133
                  89******7653333033348*****************************************************************876268999988 PP

        NF-YC  95 ivp 97 
                  iv 
  Ro01_G17464 134 IVL 136
                  775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MPFLGLPNTC PHHSTQEEAD AARHNTSFIQ LQKNNLQLFW NKQLLDIHNT SVSRSYHQLP  60
LARVKRIMKS DGVVKMISSE TPILFSKACE LFIMEVTLRA WLQTEVSKRR TVQRCDIAKA  120
IRNDPLLYHF LAPIVLATAH YDDDNDGHLN SQKDEEEKEE MTGLLHLPNT NQDVAGSGMN  180
QLLQQFMVDP LSVSSASGFP SKVSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.14e-32NF-YC family protein