PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G18230

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CAMTA

Protein Properties

Length: 1149aa MW: 129556 Da PI: 5.6238

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G18230	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	180	2.9e-56	94	210	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 l+ k+rwl++ ei++iL+n++k+++++e++t+p+ gsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+een++fqrr+y Ro01_G18230 94 LEAKHRWLRPAEICEILQNYKKFHISSEPATTPPGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSY 191 6679******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylevk 118 w+Lee+l++ivlvhy+evk Ro01_G18230 192 WMLEEDLSHIVLVHYREVK 210 **************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1149 aa Download sequence
MSEVVFHLCF ISPSSERSCF LLATTYFPNF PFTPKSHKIS HLFFCNLNHF VTSASDQEQD 60 KTDYNLMAET KRYGLGNQLV LKVGFKLDSL QILLEAKHRW LRPAEICEIL QNYKKFHISS 120 EPATTPPGGS LFLFDRKVLR YFRKDGHNWR KKKDGKTVKE AHERLKAGSV DVLHCYYAHG 180 EENENFQRRS YWMLEEDLSH IVLVHYREVK GNRTNFNHVK ETVPYSNDAE EIARHSEMEN 240 SVSSSFNPSN YQMHSQATDA TSLSSAQASE FEDVESAIYN QASSRLQPMA EKINTEFSDA 300 YYPMPFSNDY QEKLSTIPGV DFSALTQAYK RDDSIDAGDT YEPRKDREFA LWDDAENSVT 360 DIQSLSFQPS YSATHSDTIG NFPKQENETL GHLLTNNFDK RLVYGIENKP KIQQSWETSE 420 GSSNWPMDQS LHSHTEYNVT TKFPEGVDAT DLLKSLGPFL MDSDEQNDLQ FHLSNADTIS 480 KRNDSIEGKA DHAPAIKPLL DGSFGDGLKK LDSFNRWMSK ELEDVDEPQM QSSSGAYWDT 540 VESENEVDES SVPLQVRLDS YMLGPSLSHD QLFSIVDFSP NWAYENSEIK VLITGRFLKG 600 QHAESCKWSC MFGEVEVPAE VIADGVLRCY SPVHKAGRLP FYVTCSNRLA CSEVREFEYR 660 VAKTQDVDSK DYYSDCSNET LNMRFGKLLS LSSTSPNCDP ISIAENSEVS GKISSLLKND 720 NDEWDKMLQL TSDEDFSLER VQEQLLEQLL KEKLHAWLLE KLAAGGKGPS VLDEGGQGVL 780 HFGAALGYDW VLLPTITAGV SVNFRDVNGW TALHWAAFCG RERMVASLIS LGAAPGALTD 840 PTTKYPTGET PADLASEQRH KGIAGYLAES ALSAHLSSLN LDIKEGNSAE ISGGKAVSAS 900 SRDGELTDGL SLRDSLTAVC NATQAAARIH QVFRVQSFQR KQMKEYNGDK FGISNERALS 960 LIGVKAHKAG KRDQQVDAAA IRIQNKFRSW KGRKDYLIIR QRIVKIQAHV RGHQVRKNYR 1020 KIVWSVGIVE KIILRWRRKG SGLRGFKPEP LPEGPSMQIS SSKDDDYDVL KEGRKQTEER 1080 LQKALARVKS MVQYPEARDQ YHRLLNVVTE IQETKVLNSS EGTSAYMDDE LIDIEALLDE 1140 DIFMPTAAS

Sequence ? help Back to Top

Protein Sequence Length: 1149 aa Download sequence

MSEVVFHLCF ISPSSERSCF LLATTYFPNF PFTPKSHKIS HLFFCNLNHF VTSASDQEQD  60
KTDYNLMAET KRYGLGNQLV LKVGFKLDSL QILLEAKHRW LRPAEICEIL QNYKKFHISS  120
EPATTPPGGS LFLFDRKVLR YFRKDGHNWR KKKDGKTVKE AHERLKAGSV DVLHCYYAHG  180
EENENFQRRS YWMLEEDLSH IVLVHYREVK GNRTNFNHVK ETVPYSNDAE EIARHSEMEN  240
SVSSSFNPSN YQMHSQATDA TSLSSAQASE FEDVESAIYN QASSRLQPMA EKINTEFSDA  300
YYPMPFSNDY QEKLSTIPGV DFSALTQAYK RDDSIDAGDT YEPRKDREFA LWDDAENSVT  360
DIQSLSFQPS YSATHSDTIG NFPKQENETL GHLLTNNFDK RLVYGIENKP KIQQSWETSE  420
GSSNWPMDQS LHSHTEYNVT TKFPEGVDAT DLLKSLGPFL MDSDEQNDLQ FHLSNADTIS  480
KRNDSIEGKA DHAPAIKPLL DGSFGDGLKK LDSFNRWMSK ELEDVDEPQM QSSSGAYWDT  540
VESENEVDES SVPLQVRLDS YMLGPSLSHD QLFSIVDFSP NWAYENSEIK VLITGRFLKG  600
QHAESCKWSC MFGEVEVPAE VIADGVLRCY SPVHKAGRLP FYVTCSNRLA CSEVREFEYR  660
VAKTQDVDSK DYYSDCSNET LNMRFGKLLS LSSTSPNCDP ISIAENSEVS GKISSLLKND  720
NDEWDKMLQL TSDEDFSLER VQEQLLEQLL KEKLHAWLLE KLAAGGKGPS VLDEGGQGVL  780
HFGAALGYDW VLLPTITAGV SVNFRDVNGW TALHWAAFCG RERMVASLIS LGAAPGALTD  840
PTTKYPTGET PADLASEQRH KGIAGYLAES ALSAHLSSLN LDIKEGNSAE ISGGKAVSAS  900
SRDGELTDGL SLRDSLTAVC NATQAAARIH QVFRVQSFQR KQMKEYNGDK FGISNERALS  960
LIGVKAHKAG KRDQQVDAAA IRIQNKFRSW KGRKDYLIIR QRIVKIQAHV RGHQVRKNYR  1020
KIVWSVGIVE KIILRWRRKG SGLRGFKPEP LPEGPSMQIS SSKDDDYDVL KEGRKQTEER  1080
LQKALARVKS MVQYPEARDQ YHRLLNVVTE IQETKVLNSS EGTSAYMDDE LIDIEALLDE  1140
DIFMPTAAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein