PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G18494
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 213aa    MW: 23716.8 Da    PI: 10.9098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G18494genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-114692354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 ++h+e E+rRR riN+ ++ Lr++lP++      K++Ka++L ++v+ +++L
  Ro01_G18494 46 KKHSESEKRRRTRINNQYAVLRKILPNL-----IKMDKASVLAETVRQVRDL 92
                 68*************************9.....6************988877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MQMRRSVPSY FSKQIGFPQR YGVDPVNSKN FFKPKSTAEA KVLAAKKHSE SEKRRRTRIN  60
NQYAVLRKIL PNLIKMDKAS VLAETVRQVR DLKKVVGEIG AACRGSGSDE CVIPSVVNKL  120
SLEKCVGEQE GLVKATFSCE DRPGLISDMT RELRSVKGRV VRAEMVTVGG RTKSVLWVKG  180
LGAGSEGMVW LKKALNKVVT DRARIFQKLH LAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.18e-42bHLH family protein