PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G19619
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 255aa    MW: 28395 Da    PI: 8.3805
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G19619genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed++l+d++k +G g+W++ ++  g++R++k+c++rw +yl
      Ro01_G19619 13 KGAWSKQEDQKLIDYIKTHGEGCWRSLPKLAGLHRCGKSCRLRWINYL 60
                     79********************************************97 PP
2Myb_DNA-binding52.11.5e-1666110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
      Ro01_G19619  66 RGNFEQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                      899*******************.*********.***********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MRKPCCEKEG TNKGAWSKQE DQKLIDYIKT HGEGCWRSLP KLAGLHRCGK SCRLRWINYL  60
RPDIKRGNFE QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLMKMGI  120
DPNHHRLNQT IPRNDNGSLL AAAAAAAAVA TATSTGSSMN NDNNTSFTNT NKVAPPSDQN  180
KGRASEAAAA SQGLDEDETS GSSDLNLDLT IAFPCVPLLD DQVEDRHQDQ ILLPKNKARD  240
METNLLPSPT LVLFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-74MYB family protein