PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G19946
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 190aa    MW: 21761 Da    PI: 9.9302
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G19946genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-126712998
                 -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 +++  ++l+ +d +g +W++++i+r++++r++lt+  + Fv  +++ +gD +vF + g  +++l v+++r
  Ro01_G19946  6 PPT--QELVTRDIHGCEWKFQHIFRGQPKRHLLTTRYNTFVTYKKVFVGDAFVFLRCG--NEKLGVGIRR 71
                 443..48999*********************************************666..4555888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
DMNQSPPTQE LVTRDIHGCE WKFQHIFRGQ PKRHLLTTRY NTFVTYKKVF VGDAFVFLRC  60
GNEKLGVGIR RLAHQLTHKY SPIISRHSMI IGALVAPQSA ITTSTSFVIN YNPRIIGTII  120
GVGDLSPHWT NSEWRSLEVL WDEHTTTPWS KRVSPWEIEI DQVAHVPLNL AQPLVTSKRP  180
KTYDIVLGIH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.29e-53ARF family protein