PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G21315
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 536aa    MW: 60644.9 Da    PI: 4.503
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G21315genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS262.91.1e-801194831373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                  l++lL++ Aeav++++   a++++a+l++l   s++g +++++la +ft++L+ +  +s + + +   p  ++    +++++++++++e+sP++kf+h
  Ro01_G21315 119 LTQLLFAGAEAVEEQNWPVASKIIAKLNTLqfGSENGdSSFNKLAMFFTQGLHYKTINSPEMILE---PAVSR---NTDTMSSFQMLQELSPYVKFAH 210
                  5799*************************98878888579*************999985555444...33333...56789999************** PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  +taNqaIlea++++e +H+iDfdi++G QWp+L+  La R+ +  +slR+T++   +++s+   ++tg+rL++f +++++ f f+ +++ r ed+   
  Ro01_G21315 211 FTANQAILEATQEDEDIHVIDFDIMEGSQWPSLMVDLAMRKgRRCASLRVTAITV-DQQSASLAQQTGRRLKEFSDSINLLFMFDQMMMAREEDF--T 305
                  *****************************************55567********9.55789999**********************877766655..7 PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl.eaklpreseerikv 285
                  +++v  ++a++ n++++  +++++s sl +   ++L  + +lsPk++v+v++e    +++ s  F++ f+eal++y al dsl  +  ++ +   + +
  Ro01_G21315 306 KIEVV-DDAVIANCMIHQLHMPNRSISLVK---TFLGGMTKLSPKLIVLVQEElfnfSKMPSIFFVDFFSEALHHYNALCDSLvTSFCGEYEMGLRQI 399
                  88776.678888999999999999999999...********************64433345559*******************44455555577899* PP

         GRAS 286 ErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  E+e+lg +i + v +   e++er+     W++ + +  GFk++pls+ +++qak+l++ ++  gy v++e+g l l+Wk+rpL+++S W
  Ro01_G21315 400 EKEVLGMKILDSVRQFPCEKQERTL----WEDCFASlKGFKSIPLSSCTVSQAKYLVSLFN-GGYWVQHEKGRLALCWKSRPLTTASIW 483
                  *******************888877....*****9868***********************.89************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    
MEVELIDHSF NPSYIDELHE CSFESESSFQ TSYFFPPCTT NVDRNSDHEC LNRLLQIEAQ  60
LMDIDSSISE SDVIGIDGVV DSVFASCISE EAQENVHVST EGKSLLKEIQ VDLLEESSLT  120
QLLFAGAEAV EEQNWPVASK IIAKLNTLQF GSENGDSSFN KLAMFFTQGL HYKTINSPEM  180
ILEPAVSRNT DTMSSFQMLQ ELSPYVKFAH FTANQAILEA TQEDEDIHVI DFDIMEGSQW  240
PSLMVDLAMR KGRRCASLRV TAITVDQQSA SLAQQTGRRL KEFSDSINLL FMFDQMMMAR  300
EEDFTKIEVV DDAVIANCMI HQLHMPNRSI SLVKTFLGGM TKLSPKLIVL VQEELFNFSK  360
MPSIFFVDFF SEALHHYNAL CDSLVTSFCG EYEMGLRQIE KEVLGMKILD SVRQFPCEKQ  420
ERTLWEDCFA SLKGFKSIPL SSCTVSQAKY LVSLFNGGYW VQHEKGRLAL CWKSRPLTTA  480
SIWVPLTNSR ETVSAPSDLS FSELMQWDRL ARPKQAQRAE RVINLIPDGQ AHTESN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.18e-47GRAS family protein