PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G22498

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GeBP

Protein Properties

Length: 290aa MW: 33203.1 Da PI: 4.858

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G22498	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	54.3	3.7e-17	105	196	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 + r+w e+Dei+lL Gli++ +k++ + ++fy + ks+ ++s sq+ +K+ rLK+Kf + ++ +++ ++ s++h++ f+lsk+ Wg Ro01_G22498 105 SGRIWKEKDEIILLEGLISYFSKNK-GMIYEPKKFYTEIDKSLP-DMSLSQVRDKVWRLKNKFINLMAS-RTDPIFAKSESHEKILFDLSKRAWG 196 569**************955554.5677899*****97.89***************999.67777777889999********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MAAIPHAYPP PFTNYEFCYD DDSSSDDDYI PMEELEDEEE NEEDEDEAAA YFDDQDNDSP 60 SLAGSDEEYK CESDTESETA PSPAKRKSKS TKSNNPNKKN KSSSSGRIWK EKDEIILLEG 120 LISYFSKNKG MIYEPKKFYT EIDKSLPDMS LSQVRDKVWR LKNKFINLMA SRTDPIFAKS 180 ESHEKILFDL SKRAWGADLG KCRDEKKSSG KLKTSTDAKK NTSLGPMMPI DDDVILKAFD 240 EYLGSRSLIK PKGLANKWRK LTYLKAIYEL DEANFQAELQ HHKLNAYKKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	4e-09	GeBP family protein