PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G22500

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GeBP

Protein Properties

Length: 585aa MW: 66269.2 Da PI: 8.9954

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G22500	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	53	9.3e-17	132	218	6	97
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 w+++ e+v+L Gli+f +g + ++ ++fy ++k+++ k q+ +K+ +LKkK+++++++ +++++ s++++h++ if+lsk+ Wg Ro01_G22500 132 TWTDNEEMVILGGLISF---NGENMQHKPEDFYMYIKDRLG-KGDPIQVQKKVTSLKKKYRRMQEQ-AQNNQASVTNSHEEMIFNLSKICWG 218 5**************...7888888999*****97.67899**************9.999999****************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MVSSSLNENQ HLVSSFPNND LEGIVAADTF EGSSSESDDI NCVNEAHSRK EIKKKKIAIP 60 NPASSAVVDS KAAIPKRPRE EKVDVNRSEN RSVVVEVSSK RKKVKVAKSI TTSTVTAAVN 120 KSNNKPSSAG ITWTDNEEMV ILGGLISFNG ENMQHKPEDF YMYIKDRLGK GDPIQVQKKV 180 TSLKKKYRRM QEQAQNNQAS VTNSHEEMIF NLSKICWGEE TKSETKNTRI ANANADADDN 240 ANADDDKINK EVQTPLEKKN VQIHMDKKNQ DQKNEVLMNQ NQKNEVPMNK GEETKSETKN 300 TRIANANADA DDNANADDDK INKEVQTPLE KKNVQIHMDK KNQDQKNEVL MNQNQKNEVP 360 MNKGAETKSE TKNTRIANAN ADADADDDKI NKEVQTPLEK KNVQIDMDKK NKGLKNKGLK 420 NKGLKNKGLM NKGPMNKGPM NQHQKNEVPM NQHQKNEVPM NQHQKNEVPM NQHQKNEVPM 480 NQNQKNGVPM NEGLMNKVLM NEDQTNKIQR SEIFQVLRYG LHNYFRTEPF DPMWADAEEI 540 DSLADDWKEF KIAEAKYKMA KSKFDMKAKG IAIKAYEEFG YPNDS

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MVSSSLNENQ HLVSSFPNND LEGIVAADTF EGSSSESDDI NCVNEAHSRK EIKKKKIAIP  60
NPASSAVVDS KAAIPKRPRE EKVDVNRSEN RSVVVEVSSK RKKVKVAKSI TTSTVTAAVN  120
KSNNKPSSAG ITWTDNEEMV ILGGLISFNG ENMQHKPEDF YMYIKDRLGK GDPIQVQKKV  180
TSLKKKYRRM QEQAQNNQAS VTNSHEEMIF NLSKICWGEE TKSETKNTRI ANANADADDN  240
ANADDDKINK EVQTPLEKKN VQIHMDKKNQ DQKNEVLMNQ NQKNEVPMNK GEETKSETKN  300
TRIANANADA DDNANADDDK INKEVQTPLE KKNVQIHMDK KNQDQKNEVL MNQNQKNEVP  360
MNKGAETKSE TKNTRIANAN ADADADDDKI NKEVQTPLEK KNVQIDMDKK NKGLKNKGLK  420
NKGLKNKGLM NKGPMNKGPM NQHQKNEVPM NQHQKNEVPM NQHQKNEVPM NQHQKNEVPM  480
NQNQKNGVPM NEGLMNKVLM NEDQTNKIQR SEIFQVLRYG LHNYFRTEPF DPMWADAEEI  540
DSLADDWKEF KIAEAKYKMA KSKFDMKAKG IAIKAYEEFG YPNDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	5e-10	GeBP family protein