PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G23896
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 517aa    MW: 57738.3 Da    PI: 8.1634
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G23896genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.5e-1421117396
                  EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE......EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy....rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                  k+   +++l+ g + +   fae++    g+  +   + l++++gr+W  ++ +    +  +g        +  Wk+Fv++n+Lk+gD +vF+l++  +
  Ro01_G23896  21 KIV-LASALRDGKIKIQGVFAEAYicaRGV--C--SVNLQNSDGRTWPTTCAVevwnN--RGDrrrqLQGRVSWKSFVQDNHLKVGDACVFELKKG-S 110
                  444.356777888999999**999987656..6..5***************7777552..3333444555589*******************9874.4 PP

                  E..EEEE CS
           B3  90 felvvkv 96 
                  + +++k+
  Ro01_G23896 111 KVPTFKM 117
                  4466655 PP
2B342.89.1e-14143229899
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                    +l+ g l +p++ ++++g       t+ l+ ++g +W ++l  +k+ g+++l+kGW eF++   L+ g +++F+ +g  s f   v++f++
  Ro01_G23896 143 TQALEDGKLEIPRTVVRQCGDR--LAETIFLKVPDGAQWGIEL--TKSNGKVWLQKGWPEFAEHYSLEHGSVLLFSSEGGySHF--GVQIFKR 229
                  56678889***********977..6669***************..*******************************88877777..8888876 PP
3B3438e-142943701799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   lp+kf++++ +  + s  + l+ +sg +Wev +  ++++++++++kGW  F k   L+ g f++F ++g+s+f   v +f++
  Ro01_G23896 294 KLPNKFVKKYRE--HLSNSVCLKIPSGCEWEVGV--TRSGNKIWFEKGWPAFSKFYSLDYGAFLLFGYEGNSKF--QVCIFDT 370
                  59********74..48889***************..**********************************9999..9999987 PP
4B342.11.6e-134335121698
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  l l  +f++++ +++++   ++l +  +rsW vkl++ ++ ++  l++GW  F ++n L +gD+++F+l++ ++  l+v++fr
  Ro01_G23896 433 LNLRATFVQSFAKQEQQ--LVKL-QVGNRSWPVKLNVYNRHSAAKLSAGWVAFSNENCLSDGDVCIFELIQVNDIVLKVHIFR 512
                  55667788777766544..4444.4577*******8877777899*************************999999****998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    
MSCSSRRDAG EPCFPAKSFF KIVLASALRD GKIKIQGVFA EAYICARGVC SVNLQNSDGR  60
TWPTTCAVEV WNNRGDRRRQ LQGRVSWKSF VQDNHLKVGD ACVFELKKGS KVPTFKMASR  120
GWRKRQGPAF PVTTPSFFTM VITQALEDGK LEIPRTVVRQ CGDRLAETIF LKVPDGAQWG  180
IELTKSNGKV WLQKGWPEFA EHYSLEHGSV LLFSSEGGYS HFGVQIFKRN TLEMNYPPNS  240
SSTVEMNYAS NSSHGDGDGA GTGADADADA DADDDDDDAD DADAGADAGS SVDKLPNKFV  300
KKYREHLSNS VCLKIPSGCE WEVGVTRSGN KIWFEKGWPA FSKFYSLDYG AFLLFGYEGN  360
SKFQVCIFDT SATEIDYPIR IEETDNINHK DDNSVEILDD FPRSCPKTRG KSPLPCPRPH  420
KRKRIITKKF KALNLRATFV QSFAKQEQQL VKLQVGNRSW PVKLNVYNRH SAAKLSAGWV  480
AFSNENCLSD GDVCIFELIQ VNDIVLKVHI FRLIPCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-23B3 family protein