PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G24158
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GeBP
Protein Properties Length: 252aa    MW: 29481.9 Da    PI: 6.3352
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G24158genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57333.61.1e-10911612297
       DUF573  22 fkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  f++++  + +   ++fy+++k+++  +  + q+ +K+++LKkK+ k++++    +++sf+++h++k+f lsk+ W+
  Ro01_G24158  91 FREEKAENRKYKPKEFYSYIKDRLG-QGDSIQVQDKVKSLKKKYIKMQAR----NQMSFANSHEEKVFILSKIYWR 161
                  666777777778899********97.56789*******************....9********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MEPKTSSLDD IEGRVVADSF EGSFSESDQD DNKYENENEA QSKYENENEA YSTPPGSTIT  60
DQKMMIIKKK IAIPNPASAA ADSKAANPKR FREEKAENRK YKPKEFYSYI KDRLGQGDSI  120
QVQDKVKSLK KKYIKMQARN QMSFANSHEE KVFILSKIYW RKNPKEKNDH DQKKNTKEKS  180
DQILLDGLRH YLERESIDSR WVNEEQLATL KNLWNNLQLS KVRYDLAISE FDVELNQRAL  240
EVYKEFGYEN DP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-07GeBP family protein