PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G24539
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 165aa    MW: 18005.4 Da    PI: 7.5732
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G24539genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.35.2e-3839134195
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                  +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l++ela
  Ro01_G24539  39 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQTELA 134
                  7***********************9989*****************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MADEPQAKHR GTSDRKASGK RPTLVNHHES ISSSVASAPC GACKFLRRKC ISGCIFAPHF  60
GSDQGAARFA AVHKVFGASN VSKLLLHIPL NRRHDAVVTI SYEAQARLSD PVYGCVSTIL  120
ALQQQVASLQ TELAMPLLLS RPSQDEEEDE EESQVPHILS LDRYT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.19e-67LBD family protein