PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G26083
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 565aa    MW: 61696.2 Da    PI: 4.8303
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G26083genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.57.4e-1362015591374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv++L++cAeav++++ + a+al++++  la ++  +m+++a+yf+eALa+r+++    +y   p  ++s    s+ l++   f+e++P+lkf+h+ta
  Ro01_G26083 201 LVHALMACAEAVQQDNIKVADALVKQVGALALSQSGAMRKVATYFAEALARRIYK----IY---PLDDSS---YSDDLQM--HFYETCPYLKFAHFTA 286
                  689***************************************************9....44...333333...5566555..5*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+e+g++La++Ae++gv+f+f+ +va++l+dle+++L++
  Ro01_G26083 287 NQAILEAFATASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQEVGWKLAQLAETIGVEFQFRGFVANSLADLEPSMLDI 384
                  ************************************************************************************************** PP

         GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   p   E+laVn+v++lh ll++++++e+    v+  +ks++Pk+v+vveqea+hn++ Fl+rf e+l+yys+lfdsle +  +   e+ ++++++lg+
  Ro01_G26083 385 CPpeVETLAVNSVFELHPLLARPGAIEK----VMASIKSMKPKIVTVVEQEANHNGPVFLDRFNESLHYYSTLFDSLEGS--SGPTEDLVMSEVYLGK 476
                  998899**********************....*********************************************999..466899********** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +i+nvvac g +r+erhetl +Wr+rl++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++gsl+lgW++rp++++SaW+
  Ro01_G26083 477 QICNVVACDGGDRVERHETLTQWRDRLGTAGFDPVHLGSNAFKQASMLLELFAgGDGYRVEENNGSLMLGWHTRPMIATSAWQ 559
                  **********************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    
MKRNHQNSCG GQNDGGGGGY RRGGVSKGEC SSVSNSKAKI WEEEQESGGM DELLAVLGYK  60
VRSSDMADVA YKLEQLEMVM GSAQDDGISQ LSDTVHYNPS DLSGWVQSMI SELNNNSPNS  120
STINFSNKHI ETQSRIYNDN SEYDLRAIPG VAAYPPTQLQ SESETTSKRL RTSSAPTASS  180
SSSIETRPVV LVDTEDSGVR LVHALMACAE AVQQDNIKVA DALVKQVGAL ALSQSGAMRK  240
VATYFAEALA RRIYKIYPLD DSSYSDDLQM HFYETCPYLK FAHFTANQAI LEAFATASRV  300
HVIDFGLKQG MQWPALMQAL ALRPGGPPAF RLTGIGPPQP DNTDALQEVG WKLAQLAETI  360
GVEFQFRGFV ANSLADLEPS MLDICPPEVE TLAVNSVFEL HPLLARPGAI EKVMASIKSM  420
KPKIVTVVEQ EANHNGPVFL DRFNESLHYY STLFDSLEGS SGPTEDLVMS EVYLGKQICN  480
VVACDGGDRV ERHETLTQWR DRLGTAGFDP VHLGSNAFKQ ASMLLELFAG GDGYRVEENN  540
GSLMLGWHTR PMIATSAWQP ASRTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein