PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G26157
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 168aa    MW: 19474 Da    PI: 10.5358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G26157genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.2e-1398141248
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 
                  +++GV + + +g++++eIrdp   + +  r++l +fgta +Aak +++
  Ro01_G26157  98 HCRGVQQQP-WGKYAVEIRDP---NrRGSRVWLRTFGTAIKAAKTYDR 141
                  68*******.**********9...4334******************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MATLDHVLTL ELIKNHLLGE FSPMIKSSPV TKLSTSSSAS DLSKSQSRSS STSQTLIEIS  60
NYLDNELFNF TSNPISNNFF EFETKPQKTV PNEEKKRHCR GVQQQPWGKY AVEIRDPNRR  120
GSRVWLRTFG TAIKAAKTYD RGEKMRQEEK KWRKKKEKEE KSFRQNSV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158RKKKEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.17e-23ERF family protein