PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G26752
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 304aa    MW: 33480.1 Da    PI: 6.3703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G26752genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.4e-10216259755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++ ++RR+ri +++  L+el+P+ +      K++ +++LekA+ Y+k Lq
  Ro01_G26752 216 IAAKNRRERISERLKILQELVPNgC------KVDLVTMLEKAISYVKFLQ 259
                  5679*******************77......******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MALAKDRMPH DQSLQQQVIS LDHHLSNNGF LFRSAASITS CHQADDDDDD DQVAAGHSVI  60
NFKNNSFFHD NSASSLLSFE KNDHNSLTNY LKTNNAINHD DNDATYHCIS VDPNRLSGDF  120
NCFQTASNYS SLSSPSKESH GSELGSAYGW LYSEATLMAD SFIESETHAQ AAFQKRPHTG  180
ESLQPLKKQC TSDVAAATTK KPKPKSSSPS KDPQSIAAKN RRERISERLK ILQELVPNGC  240
KVDLVTMLEK AISYVKFLQL QVKVLATDEF WPVQGGKAPD ISQVKEAIDA ILSSQRDTSS  300
SSKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.16e-58bHLH family protein