PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G26756
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 235aa    MW: 26507 Da    PI: 4.8161
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G26756genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.6e-1332114790
                  .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  +   +++++l +p kf + h  ++k+++ tl+le + + sW+v +  r+  g+++l+ GW++Fv++n + +   ++++++g+++f
  Ro01_G26756  32 RQPDHNTDMLKIPMKFRRMHlHKDKATQATLRLEELPNVSWKVDV--RRDAGEILLKLGWEKFVEDNMVGTITGLMLTYEGNMTF 114
                  455667788************77888999****************..**********************9988888888887776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MALSDVWIAF FGSSRMRDEA IQRTPTFVCT VRQPDHNTDM LKIPMKFRRM HLHKDKATQA  60
TLRLEELPNV SWKVDVRRDA GEILLKLGWE KFVEDNMVGT ITGLMLTYEG NMTFSVARFV  120
EDNELFVGGK FLLFHCDGGT TLRAESDGDD LNDDGDDRED NNQIVGTNEV ARFDLATWDV  180
PGHPNCTCMI RTYSAFMVQV CPAGTKHIGG KSFASAKEEE EKEEVPSRQS MMGGQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-08B3 family protein