PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G27445

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 229aa MW: 25845.1 Da PI: 6.9811

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G27445	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.1	1.6e-14	74	188	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........................tekerrtraetrtgCkaklkvkkek. 72 Y Y++ v Fs+r+ k + r+g +++r +vCsk+g + + kk + +++ + r+ C a ++v+ +k Ro01_G27445 74 LYTYYSHVVKFSTRRYKLDRD-RDGVVIWRGWVCSKHGLAPDIKKIyankggkhmgsepkiakkliesssrsMLHLEEQDTRGRVCCPAAFTVRYSKe 170 79*************9998.9999*********9998887999************9876665444455888899*******999 PP FAR1 73 dgkwevtkleleHnHela 90 +g+++v+k+ +HnHela Ro01_G27445 171 KGVYYVSKFAAQHNHELA 188 **************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MDTDECGLRF SNCAYYCSFS SDEDELEEYA SLGEATKSDV SGGYVHFNGK NIKKLDMKDL 60 ENVDFAIVDE AENLYTYYSH VVKFSTRRYK LDRDRDGVVI WRGWVCSKHG LAPDIKKIYA 120 NKGGKHMGSE PKIAKKLIES SSRSMLHLEE QDTRGRVCCP AAFTVRYSKE KGVYYVSKFA 180 AQHNHELATP EEVQFLRSHR GGSGLYCCVQ WAGKQLVGEI VVHQAGEVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-09	FAR1 family protein