PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G27756

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WOX

Protein Properties

Length: 243aa MW: 26293.3 Da PI: 5.079

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G27756	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.3	1.7e-15	31	91	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+ +++eq+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ Ro01_G27756 31 RSRWIPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 91 89***************99***********************************997 PP
2	Wus_type_Homeobox	105	5e-34	30	93	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW P+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Ro01_G27756 30 VRSRWIPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 93 589***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MEDDQIGGQE AKEPNSPNST IGSSERSEPV RSRWIPKPEQ ILILESIFNS GMVNPPKEET 60 VRIRKLLEKF GSVGDANVFY WFQNRRSRSR RRQRQLQASL EQRNQAAPAQ QVSGAIQYEN 120 STSSAPAAAG AATMAFGASS PSTFGSNYDL VAGSSSSCCV LGAEDDHFFS VSGQMGFPEI 180 EHSSSGVTSV LGPSDASNLH FQSGLNLMMT VFINGVPTEV PRGPLDMKAM FGTQDFLLVS 240 YSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	4e-51	WOX family protein