PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G29551
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 155aa    MW: 17254.5 Da    PI: 10.7771
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G29551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1859109155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Ro01_G29551  59 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 109
                  68*****998.**********854...59*********************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MTTAPSSYNT ETTTESTSFN SSSPSSSSGF SPKPGQPGNS DPTEKRVNKR ARETSSKHPV  60
YRGVRMRTWG KWVSEIREPR KKNRIWLGTF STPEMAARAH DVAALSIKGD SAILNFPGIN  120
FCITTPKSAI SQNMIDKRAF PKLKVYHDWK MSVAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-38ERF family protein