PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G29583

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 543aa MW: 60162.2 Da PI: 9.853

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G29583	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	5.1e-12	359	403	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ L++llP+ +K +Ka++L A eY+ sL Ro01_G29583 359 HMISERKRREKLNESFHSLKSLLPPG-----TKKDKASVLITAREYLTSL 403 8899******************97.....8*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MVYMDTAFQL DEGTRSNFLK LHGGFSMSIG CQCSKLFKMR FAFRNGLAYV ELQEMEIQRL 60 ASVEIQKKFY QEARIKTAVF MGCKSGEIEI GFSNVSQMNI KKELIMRSWM LPEAFSRSQL 120 SSHKAELVPS SSNRANIEQQ NPLSSSSSSL RSLSTMDSPE YSSLLFNTIQ TSTSTPTTSL 180 NIPADQVFTT ANFTSLLQPI LSPTTNIFSS TSTSTSTSPS PHQQSMQAFS RIRGNIQLPS 240 PEIEDAEITR AILAVLTSPS PSASITSHQL VPPALNNDPA PSSSHHHGLL NPKPSGAFKN 300 YSPSPLAPRT QTKGASNLVV RKQTMVKRSI SFLRSLNLLR IRDQGMQTAT RPTTSQLHHM 360 ISERKRREKL NESFHSLKSL LPPGTKKDKA SVLITAREYL TSLKAQVDEL SKKNQQLETA 420 ARLIAKDEEE VAGSSSSERV SVTLTHVSGS TTDQDHPQIT DLQVIVRSGE SSTENIVIRI 480 LEFLKQVKNV SLVSMEASTL KTESNPNINR VVLRLRVDDQ ENEWDESAFQ EAVRRVVGDV 540 ALK

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MVYMDTAFQL DEGTRSNFLK LHGGFSMSIG CQCSKLFKMR FAFRNGLAYV ELQEMEIQRL  60
ASVEIQKKFY QEARIKTAVF MGCKSGEIEI GFSNVSQMNI KKELIMRSWM LPEAFSRSQL  120
SSHKAELVPS SSNRANIEQQ NPLSSSSSSL RSLSTMDSPE YSSLLFNTIQ TSTSTPTTSL  180
NIPADQVFTT ANFTSLLQPI LSPTTNIFSS TSTSTSTSPS PHQQSMQAFS RIRGNIQLPS  240
PEIEDAEITR AILAVLTSPS PSASITSHQL VPPALNNDPA PSSSHHHGLL NPKPSGAFKN  300
YSPSPLAPRT QTKGASNLVV RKQTMVKRSI SFLRSLNLLR IRDQGMQTAT RPTTSQLHHM  360
ISERKRREKL NESFHSLKSL LPPGTKKDKA SVLITAREYL TSLKAQVDEL SKKNQQLETA  420
ARLIAKDEEE VAGSSSSERV SVTLTHVSGS TTDQDHPQIT DLQVIVRSGE SSTENIVIRI  480
LEFLKQVKNV SLVSMEASTL KTESNPNINR VVLRLRVDDQ ENEWDESAFQ EAVRRVVGDV  540
ALK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	363	368	ERKRRE
2	364	369	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-55	bHLH family protein